Cranfield GenoVerse Data Browser
Solanum lycopersicum SL2.50 - Santa Clara and Lam Variant Calling
| Chromosome 1 |
Chromosome 2 |
Chromosome 3 |
Chromosome 4 |
Chromosome 5 |
Chromosome 6 |
Chromosome 7 |
Chromosome 8 |
Chromosome 9 |
Chromosome 10 |
Chromosome 11 |
Chromosome 12 |
Filter the SNP and InDels searching for those
LAM 157 genes that match a search criteria and that contain variants.
Choose one of the radio buttons according to the search type you
want to do:
The genes that contain variants are displayed in a table.
- Free search: Use any term to filter.
- Virus related terms: Choose from a list of terms that are linked
to virus replication or resistance.
For example "polymerase"
- Virus related genes: Choose from a list of genes that have been
reported to be linked linked to virus resistance.
Download the output files:
- VCF file: Contains the variants that are within or around
(+/- 2000 bp) the genes that match the search criteria.
- GFF3 file: Contains the annotated genes that match the search
criteria and that include variants.
- Table: The table in HTML format.